PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000018G0790
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 308aa    MW: 33279.6 Da    PI: 8.2059
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000018G0790genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.61.7e-14113161256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +y+GVr+++ +g+++AeIrdps  g   r +lg   tae+Aa+a+++a+ +++g+
  PH01000018G0790 113 HYRGVRRRP-WGKYAAEIRDPSRHG--SRLWLG---TAEQAAAAYDRAAFRMRGA 161
                      7********.**********96544..****77...9****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.0E-26112168IPR001471AP2/ERF domain
CDDcd000181.81E-16113170No hitNo description
SuperFamilySSF541718.5E-18113169IPR016177DNA-binding domain
PROSITE profilePS5103219.559113168IPR001471AP2/ERF domain
SMARTSM003803.7E-29113174IPR001471AP2/ERF domain
PfamPF008471.6E-8113160IPR001471AP2/ERF domain
PRINTSPR003674.2E-13114125IPR001471AP2/ERF domain
PRINTSPR003674.2E-13150170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSLSLGRSNG ADHLVAPAPA SAPPAGARAP APRVGVDVSL SLAGAVAHGQ YLPLNENDSL  60
DMVLFDVLRE ASSLAMAASP SSPPLKTQRR AIANSAVRKG GGGGGCNKGA ERHYRGVRRR  120
PWGKYAAEIR DPSRHGSRLW LGTAEQAAAA YDRAAFRMRG AKALLNFPPA VAENGDRGGA  180
AAAKQLLFLY LTVISNCTVL SLKLQYELAA EDYTSYVEAR EDCSFQILVD ESETMCISNL  240
AEPKVLYKHL LAPPIADQWK PIRFVENYFS IQTIDGEEEN ERNSDHPGSN MSHQLPRTST  300
QYWCTIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A4e-25112171466ATERF1
2gcc_A4e-25112171466ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032375e-60AP003237.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0046E05.
GenBankAP0032495e-60AP003249.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0435B05.
GenBankAP0149575e-60AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232322.14e-49PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like
TrEMBLA0A0Q3JBZ24e-49A0A0Q3JBZ2_BRADI; Uncharacterized protein
STRINGGRMZM2G474326_P011e-43(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.11e-20ethylene responsive element binding factor 2